Stochastic Optical Reconstruction Microscopy and its application

Yang Jianyu; Pan Leiting; Hu Fen; Zhang Xinzheng; Xu Jingjun

doi:10.3788/IRLA201746.1103008

Volume 46 Issue 11

Dec. 2017

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Yang Jianyu, Pan Leiting, Hu Fen, Zhang Xinzheng, Xu Jingjun. Stochastic Optical Reconstruction Microscopy and its application[J]. Infrared and Laser Engineering, 2017, 46(11): 1103008-1103008(8). doi: 10.3788/IRLA201746.1103008

Citation:

Yang Jianyu, Pan Leiting, Hu Fen, Zhang Xinzheng, Xu Jingjun. Stochastic Optical Reconstruction Microscopy and its application[J]. Infrared and Laser Engineering, 2017, 46(11): 1103008-1103008(8). doi: 10.3788/IRLA201746.1103008

Stochastic Optical Reconstruction Microscopy and its application

doi: 10.3788/IRLA201746.1103008

1.
Key Laboratory of Weak-Light Nonlinear Photonics,Ministry of Education,TEDA Institute of Applied Physics,School of Physics,Nankai University,Tianjin 300071,China;
2.
The 2011 Project Collaborative Innovation Center for Biological Therapy,Nankai University,Tianjin 300071,China

Received Date: 2017-10-10
Rev Recd Date: 2017-11-20
Publish Date: 2017-11-25

Abstract

A batch of super-resolution fluorescence microscopy technologies have been invented to overcome the diffraction limit of traditional optical microscopy. It thereby greatly enhances the capacity of sub-cellular structure investigation. Among these super-resolution microscopy, Stochastic Optical Reconstruction Microscopy (STORM) based on single molecule localization has attracted more and more attention by researchers due to its straightforward principle, simple operation mode as well as super-high resolution. First, the basic principle of single molecule localization was introduced, the design of the light path of STORM was discussed, and the principles of 2D-STORM and 3D-STORM were provided. Then, the development of multi-color imaging as well as correlative STORM and electron microscopy were discussed. Finally, some recent typical researches depending on STORM were presented.
- super-resolution imaging,
- single molecule localization,
- Stochastic Optical Reconstruction Microscopy,
- correlative imaging

References

[1]	Gustafsson M G. Surpassing the lateral resolution limit by a factor of two using structured illumination microscopy[J]. Journal of Microscopy, 2000, 198(2):82-87.
[2]	Hell S W, Wichmann J. Breaking the diffraction resolution limit by stimulated emission:stimulated-emission-depletion fluorescence microscopy[J]. Optics Letters, 1994, 19(11):780-782.
[3]	Wei Tongda, Zhang Yunhai, Yang Haomin. Super resolution imaging technology of stimulated emission depletion[J]. Infrared and Laser Engineering, 2016, 45(6):0624001. (in Chinese)魏通达, 张运海, 杨皓旻. 受激辐射损耗超分辨成像技术研究[J]. 红外与激光工程, 2016, 45(6):0624001.
[4]	Betzig E, Patterson G H, Sougrat R, et al. Imaging intracellular fluorescent proteins at nanometer resolution[J]. Science, 2006, 313(5793):1642-1645.
[5]	Bates M, Huang B, Rust M J, et al. Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM)[J]. Nature Methods, 2006, 3(10):793-796.
[6]	Xu K, Babcock H P, Zhuang X. Dual-objective STORM reveals three-dimensional filament organization in the actin cytoskeleton[J]. Nature Methods, 2012, 9(2):185-188.
[7]	Hinterdorfer P, Oijen A. Handbook of Single-Molecule Biophysics[M]. New York:Springer, 2009.
[8]	Herbert S, Soares H, Zimmer C, et al. Single-molecule localization super-resolution microscopy:deeper and faster[J]. Microscopy and Microanalysis, 2012, 18(6):1419-1429.
[9]	Bates M, Huang B, Dempsey G T, et al. Multicolor super-resolution imaging with photo-switchable fluorescent probes[J]. Science, 2007, 317(5845):1749-1753.
[10]	Huang B, Wang W, Bates M, et al. Three-dimensional super-resolution imaging by stochastic optical reconstruction microscopy[J]. Science, 2008, 319(5864):810-813.
[11]	French J B, Jones S A, Deng H, et al. Spatial colocalization and functional link of purinosomes with mitochondria[J]. Science, 2016, 351(6274):733-737.
[12]	Pan Leiting, Hu Fen, Zhang Xinzheng, et al. Multicolor single-molecule localization super-resolution microscopy[J]. Acta Optica Sinica, 2017, 37(3):0318010. (in Chinese)潘雷霆, 胡芬, 张心正, 等. 多色单分子定位超分辨显微成像术[J]. 光学学报, 2017, 37(3):0318010.
[13]	Bossi M, Flling J, Belov V N, et al. Multicolor far-field fluorescence nanoscopy through isolated detection of distinct molecular species[J]. Nano Letters, 2008, 8(8):2463-2468.
[14]	Zhengyang Z, Samuel J K, Margaret H, et al. Ultrahigh-throughput single-molecule spectroscopy and spectrally resolved super-resolution microscopy[J]. Nature Methods, 2015, 12(10):935-938.
[15]	Dong B, Luay A, Urban B E, et al. Super-resolution spectroscopic microscopy via photon localization[J]. Nature Communications, 2016, 7:12290.
[16]	Shechtman Y, Weiss L E, Backer A S, et al. Multicolour localization microscopy by point-spread-function engineering[C]//SPIE Bios, 2016, 9714:971400L.
[17]	Hauser M, Wojcik M, Kim D, et al. Correlative super-resolution microscopy:new dimensions and new opportunities[J]. Chemical Review, 2017, 117:7428-7456.
[18]	Watanabe S, Punge A, Hollopeter G, et al. Protein localization in electron micrographs using fluorescence nanoscopy[J]. Nature Methods, 2011, 8(1):80-84.
[19]	Suleiman H, Zhang L, Roth R, et al. Correction:Nanoscale protein architecture of the kidney glomerular basement membrane[J]. Elife, 2013, 2(2):e01149.
[20]	Wojcik M, Hauser M, Wan L, et al. Graphene-enabled electron microscopy and correlated super-resolution microscopy of wet cells[J]. Nature Communications, 2015, 6(3):7384.
[21]	Lschberger A, Franke C, Krohne G, et al. Correlative super-resolution fluorescence and electron microscopy of the nuclear pore complex with molecular resolution[J]. Journal of Cell Science, 2014, 127(20):4351-4355.
[22]	Xu K, Zhong G, Zhuang X. Actin, spectrin and associated proteins form a periodic cytoskeletal structure in axons[J]. Science, 2013, 339(6118):452-456.
[23]	Moon S, Yan R, Kenny S J, et al. Spectrally resolved, functional super-resolution microscopy reveals nanoscale compositional heterogeneity in live-cell membranes[J]. Journal of the American Chemical Society, 2017, 139(32):10944-10947.
[24]	Kim D, Zhang Z, Xu K. Spectrally resolved super-resolution microscopy unveils multipath reaction pathways of single spiropyran molecules[J]. Journal of the American Chemical Society, 2017, 139(28):9447-9450.
[25]	Ge L, Zhang M, Kenny S J, et al. Remodeling of ER-exit sites initiates a membrane supply pathway for autophagosome biogenesis[J]. EMBO Reports, 2017, 18(9):1586-1603.
[26]	Karanasios E, Walker S A, Okkenhaug H, et al. Autophagy initiation by ULK complex assembly on ER tubulovesicular regions marked by ATG9 vesicles[J]. Nature Communications, 2016, 7:12420.
[27]	Hu Y, Cang H, Lillemeier B F. Superresolution imaging reveals nanometer-and micrometer-scale spatial distributions of T-cell receptors in lymph nodes[J]. Proceedings of the National Academy of Sciences of the United States of America, 2016, 113(26):7201-7206.
[28]	Schneberg J, Lehmann M, Ullrich A, et al. Lipid-mediated PX-BAR domain recruitment couples local membrane constriction to endocytic vesicle fission[J]. Nature Communications, 2017, 8:15873.
[29]	Suleiman H Y, Roth R, Jain S, et al. Injury-induced actin cytoskeleton reorganization in podocytes revealed by super-resolution microscopy[J]. JCI Insight, 2017, 2(16):94137.

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通讯作者: 陈斌, bchen63@163.com

1.
沈阳化工大学材料科学与工程学院沈阳 110142

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Stochastic Optical Reconstruction Microscopy and its application

1. Key Laboratory of Weak-Light Nonlinear Photonics,Ministry of Education,TEDA Institute of Applied Physics,School of Physics,Nankai University,Tianjin 300071,China;

2. The 2011 Project Collaborative Innovation Center for Biological Therapy,Nankai University,Tianjin 300071,China

Received Date: 2017-10-10

Rev Recd Date: 2017-11-20

Publish Date: 2017-11-25

Key words:

super-resolution imaging /
single molecule localization /
Stochastic Optical Reconstruction Microscopy /
correlative imaging

Abstract: A batch of super-resolution fluorescence microscopy technologies have been invented to overcome the diffraction limit of traditional optical microscopy. It thereby greatly enhances the capacity of sub-cellular structure investigation. Among these super-resolution microscopy, Stochastic Optical Reconstruction Microscopy (STORM) based on single molecule localization has attracted more and more attention by researchers due to its straightforward principle, simple operation mode as well as super-high resolution. First, the basic principle of single molecule localization was introduced, the design of the light path of STORM was discussed, and the principles of 2D-STORM and 3D-STORM were provided. Then, the development of multi-color imaging as well as correlative STORM and electron microscopy were discussed. Finally, some recent typical researches depending on STORM were presented.

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Reference (29)

[1]	Gustafsson M G. Surpassing the lateral resolution limit by a factor of two using structured illumination microscopy[J]. Journal of Microscopy, 2000, 198(2):82-87.
[2]	Hell S W, Wichmann J. Breaking the diffraction resolution limit by stimulated emission:stimulated-emission-depletion fluorescence microscopy[J]. Optics Letters, 1994, 19(11):780-782.
[3]	Wei Tongda, Zhang Yunhai, Yang Haomin. Super resolution imaging technology of stimulated emission depletion[J]. Infrared and Laser Engineering, 2016, 45(6):0624001. (in Chinese)魏通达, 张运海, 杨皓旻. 受激辐射损耗超分辨成像技术研究[J]. 红外与激光工程, 2016, 45(6):0624001.
[4]	Betzig E, Patterson G H, Sougrat R, et al. Imaging intracellular fluorescent proteins at nanometer resolution[J]. Science, 2006, 313(5793):1642-1645.
[5]	Bates M, Huang B, Rust M J, et al. Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM)[J]. Nature Methods, 2006, 3(10):793-796.
[6]	Xu K, Babcock H P, Zhuang X. Dual-objective STORM reveals three-dimensional filament organization in the actin cytoskeleton[J]. Nature Methods, 2012, 9(2):185-188.
[7]	Hinterdorfer P, Oijen A. Handbook of Single-Molecule Biophysics[M]. New York:Springer, 2009.
[8]	Herbert S, Soares H, Zimmer C, et al. Single-molecule localization super-resolution microscopy:deeper and faster[J]. Microscopy and Microanalysis, 2012, 18(6):1419-1429.
[9]	Bates M, Huang B, Dempsey G T, et al. Multicolor super-resolution imaging with photo-switchable fluorescent probes[J]. Science, 2007, 317(5845):1749-1753.
[10]	Huang B, Wang W, Bates M, et al. Three-dimensional super-resolution imaging by stochastic optical reconstruction microscopy[J]. Science, 2008, 319(5864):810-813.
[11]	French J B, Jones S A, Deng H, et al. Spatial colocalization and functional link of purinosomes with mitochondria[J]. Science, 2016, 351(6274):733-737.
[12]	Pan Leiting, Hu Fen, Zhang Xinzheng, et al. Multicolor single-molecule localization super-resolution microscopy[J]. Acta Optica Sinica, 2017, 37(3):0318010. (in Chinese)潘雷霆, 胡芬, 张心正, 等. 多色单分子定位超分辨显微成像术[J]. 光学学报, 2017, 37(3):0318010.
[13]	Bossi M, Flling J, Belov V N, et al. Multicolor far-field fluorescence nanoscopy through isolated detection of distinct molecular species[J]. Nano Letters, 2008, 8(8):2463-2468.
[14]	Zhengyang Z, Samuel J K, Margaret H, et al. Ultrahigh-throughput single-molecule spectroscopy and spectrally resolved super-resolution microscopy[J]. Nature Methods, 2015, 12(10):935-938.
[15]	Dong B, Luay A, Urban B E, et al. Super-resolution spectroscopic microscopy via photon localization[J]. Nature Communications, 2016, 7:12290.
[16]	Shechtman Y, Weiss L E, Backer A S, et al. Multicolour localization microscopy by point-spread-function engineering[C]//SPIE Bios, 2016, 9714:971400L.
[17]	Hauser M, Wojcik M, Kim D, et al. Correlative super-resolution microscopy:new dimensions and new opportunities[J]. Chemical Review, 2017, 117:7428-7456.
[18]	Watanabe S, Punge A, Hollopeter G, et al. Protein localization in electron micrographs using fluorescence nanoscopy[J]. Nature Methods, 2011, 8(1):80-84.
[19]	Suleiman H, Zhang L, Roth R, et al. Correction:Nanoscale protein architecture of the kidney glomerular basement membrane[J]. Elife, 2013, 2(2):e01149.
[20]	Wojcik M, Hauser M, Wan L, et al. Graphene-enabled electron microscopy and correlated super-resolution microscopy of wet cells[J]. Nature Communications, 2015, 6(3):7384.
[21]	Lschberger A, Franke C, Krohne G, et al. Correlative super-resolution fluorescence and electron microscopy of the nuclear pore complex with molecular resolution[J]. Journal of Cell Science, 2014, 127(20):4351-4355.
[22]	Xu K, Zhong G, Zhuang X. Actin, spectrin and associated proteins form a periodic cytoskeletal structure in axons[J]. Science, 2013, 339(6118):452-456.
[23]	Moon S, Yan R, Kenny S J, et al. Spectrally resolved, functional super-resolution microscopy reveals nanoscale compositional heterogeneity in live-cell membranes[J]. Journal of the American Chemical Society, 2017, 139(32):10944-10947.
[24]	Kim D, Zhang Z, Xu K. Spectrally resolved super-resolution microscopy unveils multipath reaction pathways of single spiropyran molecules[J]. Journal of the American Chemical Society, 2017, 139(28):9447-9450.
[25]	Ge L, Zhang M, Kenny S J, et al. Remodeling of ER-exit sites initiates a membrane supply pathway for autophagosome biogenesis[J]. EMBO Reports, 2017, 18(9):1586-1603.
[26]	Karanasios E, Walker S A, Okkenhaug H, et al. Autophagy initiation by ULK complex assembly on ER tubulovesicular regions marked by ATG9 vesicles[J]. Nature Communications, 2016, 7:12420.
[27]	Hu Y, Cang H, Lillemeier B F. Superresolution imaging reveals nanometer-and micrometer-scale spatial distributions of T-cell receptors in lymph nodes[J]. Proceedings of the National Academy of Sciences of the United States of America, 2016, 113(26):7201-7206.
[28]	Schneberg J, Lehmann M, Ullrich A, et al. Lipid-mediated PX-BAR domain recruitment couples local membrane constriction to endocytic vesicle fission[J]. Nature Communications, 2017, 8:15873.
[29]	Suleiman H Y, Roth R, Jain S, et al. Injury-induced actin cytoskeleton reorganization in podocytes revealed by super-resolution microscopy[J]. JCI Insight, 2017, 2(16):94137.

Stochastic Optical Reconstruction Microscopy and its application

doi: 10.3788/IRLA201746.1103008

Abstract

References

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通讯作者: 陈斌, bchen63@163.com

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